PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G224200.3
Common NameB456_007G224200, LOC105804039
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 291aa    MW: 31399.5 Da    PI: 10.6548
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G224200.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.64.4e-11555146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                        +++WT+eE+  l+ +v ++G+g W+ I +          R+  ++k++w++
  Gorai.007G224200.3  5 KQKWTAEEEAALKAGVLKHGTGKWRNILSDPEfssvlRSRSNVDLKDKWRN 55
                        79************************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.54161IPR017930Myb domain
SuperFamilySSF466898.97E-16270IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.2E-14456IPR009057Homeodomain-like
SMARTSM007177.0E-8459IPR001005SANT/Myb domain
PfamPF002495.2E-8555IPR001005SANT/Myb domain
CDDcd116605.00E-18657No hitNo description
SMARTSM005269.9E-15116181IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150423.495118186IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467855.9E-16120195IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.9E-15122188IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005387.1E-10124179IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043047Molecular Functionsingle-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGV LKHGTGKWRN ILSDPEFSSV LRSRSNVDLK DKWRNINATA  60
IWGSRQKAKL AFKRNQLAAK HDDNPMALIT VPPREEVVDA KPLAVSSGTP RATGSKKLIS  120
RLDNILLEAI TSLKEPAGSD RASIAVYIEE KYATPPNLKK LLATKLKLLV ANGTLIKVKH  180
KYKVAPRSTI SEARKSPLLL LEGRPKESSK AKKKGINILT KTQVNADLLK MRSMTAEEAA  240
AAAAQAVAEA EVAIAEAEKA AREADVAEAE AEAAKIFAKA AEKALKSRML *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00626PBMTransfer from PK06103.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012491976.10.0PREDICTED: telomere repeat-binding factor 2-like
SwissprotQ9FJW52e-85TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBLA0A0D2PDJ30.0A0A0D2PDJ3_G
STRINGPOPTR_0014s01010.11e-108(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67580.25e-76MYB_related family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]